PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G0423

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 982aa MW: 108875 Da PI: 6.2181

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G0423	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.1e-40	152	229	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+++ Gh_D08G0423 152 VCQVDDCRADLSDAKDYHRRHKVCEMHSKASKTLVGNVMQRFCQQCSRFHVLQEFDDGKRSCRRRLAGHNKRRRKRNP 229 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-33	146	214	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.017	150	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.22E-37	151	232	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-29	153	226	IPR004333	Transcription factor, SBP-box
CDD	cd00204	2.71E-7	750	864	No hit	No description
SuperFamily	SSF48403	1.61E-6	750	863	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.1E-5	750	864	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence Send to blast
MEARYGSEAQ LHGVSPEDLQ AVGKRTLEWN LNDWKWDGDL FVASRMNPVS ADGMGRQFFP 60 LGSGIPGNSS NSSSSCSDEV DLETERKREL EKRRRVTVVK DDSLNEEAGS LTLKLGGQDG 120 HGNPLSQRDT INWEGTSGKK TKLSGGSGNR AVCQVDDCRA DLSDAKDYHR RHKVCEMHSK 180 ASKTLVGNVM QRFCQQCSRF HVLQEFDDGK RSCRRRLAGH NKRRRKRNPE AVVNGNSLND 240 EQTSGYLLLS LLKILSNLHS NTSGQTTDQD VLSHLLRSLE NHTSEQGGRN ISGLLPVPQD 300 IEAVSTLFSN GQGPPQLFKQ HITGPALEMP QKGVCSHDTR GAEVQGSATG VVKMNDFDLN 360 NIYIDSDNST DDIERSPAPV NRGTSSLDCP SWVQQTSHHS SPPQTSRNSD SASGQSPSSS 420 SGGAQSRTDR IVFKLFGKEP NDFPLVLRAQ ILDWLSHSPT DIESYIRPGC IVLTVYLRQA 480 EAAWDDLCSN LSFSLSRLLD CSDDTFWRTG WICIRVQDQI AFIYNGQVLV DTYLPLGSIH 540 YGKIVNVKPI AVSATERAQF SVKGINLSRP ATRLLCSVEG KYLVQNDSHE LIDDNDDFKE 600 QDELQCINFS CSIPTVTGRG FIEIEDPCFS SSFFPFIVAE DDVCSEIRML ESLLEITDTD 660 ADVGRMEAKN VAMDFIHEVG WLLHRSQLKS RLGQLDPSSE SFSLRRFKWL MEFSMDHEWC 720 AVVKKLLNIL LDGTVGSGEH HSIYLALTEM SLLHRAVRKN CRPLVELLLR FIPENASDKL 780 GFENGTVAAG VDKTSLFRPD VLGPGGLTPL HIAAGKDGSE DVLDALTDDP GKVGIDAWNS 840 AQDSTGSTPE DYARLRGHYS YIHLVQRKIN KRSLSGHVVV DIPATPSVSS PNQKQNNETT 900 TSFEISQLEL RPVKRHCKLC DQKLPYSYGM ATNMSLSYRP AMLSMVAIAA VCVCVALLFK 960 SCPEVVYVFR PFRWELLDYG AS

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence Send to blast

MEARYGSEAQ LHGVSPEDLQ AVGKRTLEWN LNDWKWDGDL FVASRMNPVS ADGMGRQFFP  60
LGSGIPGNSS NSSSSCSDEV DLETERKREL EKRRRVTVVK DDSLNEEAGS LTLKLGGQDG  120
HGNPLSQRDT INWEGTSGKK TKLSGGSGNR AVCQVDDCRA DLSDAKDYHR RHKVCEMHSK  180
ASKTLVGNVM QRFCQQCSRF HVLQEFDDGK RSCRRRLAGH NKRRRKRNPE AVVNGNSLND  240
EQTSGYLLLS LLKILSNLHS NTSGQTTDQD VLSHLLRSLE NHTSEQGGRN ISGLLPVPQD  300
IEAVSTLFSN GQGPPQLFKQ HITGPALEMP QKGVCSHDTR GAEVQGSATG VVKMNDFDLN  360
NIYIDSDNST DDIERSPAPV NRGTSSLDCP SWVQQTSHHS SPPQTSRNSD SASGQSPSSS  420
SGGAQSRTDR IVFKLFGKEP NDFPLVLRAQ ILDWLSHSPT DIESYIRPGC IVLTVYLRQA  480
EAAWDDLCSN LSFSLSRLLD CSDDTFWRTG WICIRVQDQI AFIYNGQVLV DTYLPLGSIH  540
YGKIVNVKPI AVSATERAQF SVKGINLSRP ATRLLCSVEG KYLVQNDSHE LIDDNDDFKE  600
QDELQCINFS CSIPTVTGRG FIEIEDPCFS SSFFPFIVAE DDVCSEIRML ESLLEITDTD  660
ADVGRMEAKN VAMDFIHEVG WLLHRSQLKS RLGQLDPSSE SFSLRRFKWL MEFSMDHEWC  720
AVVKKLLNIL LDGTVGSGEH HSIYLALTEM SLLHRAVRKN CRPLVELLLR FIPENASDKL  780
GFENGTVAAG VDKTSLFRPD VLGPGGLTPL HIAAGKDGSE DVLDALTDDP GKVGIDAWNS  840
AQDSTGSTPE DYARLRGHYS YIHLVQRKIN KRSLSGHVVV DIPATPSVSS PNQKQNNETT  900
TSFEISQLEL RPVKRHCKLC DQKLPYSYGM ATNMSLSYRP AMLSMVAIAA VCVCVALLFK  960
SCPEVVYVFR PFRWELLDYG AS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-32	144	226	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20309	0.0	boll\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622324	0.0	KJ622324.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL16) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012473417.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0D2QRW7	0.0	A0A0D2QRW7_G
STRING	POPTR_0002s18970.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1